Member Resources

• AMRrules Specification & Syntax - v1.0 [docs]
• AMRrules Technical Guidance - v1.6 [PDF]
• AMRrules Browser [website]
• AMRrules Software pacakge [docs]
• AMRrules Documentation [docs]
• AMRgen R package for analysing matched genotype/phenotype data [AMRgen repo]
• AMRrulemakeR R package for automating rule generation using AMRgen analyses [AMRrulemakeR repo]
• Code and tools for accessing public AMRFinderPlus + AST data [datacuration repo]
• CARD/Antimicrobial Resistance Ontology (ARO): [browser]
• Variant specification: HGVS
• AMRrules syntax: [docs]
• EUCAST: [Breakpoints] [Expected Resistance]
• NCBI AMRFinderPlus: [software]
• NCBI refgene (AMR Gene Catalog): [browser]
• NCBI AMR Reference Gene Hierarchy: [browser] [TXT file download]
• NCBI refseq: [browser]
• NCBI AST data: [browser]
• NCBI AST data submission: [info] [submission format]
• NCBI Taxonomy: [browser]
• Meeting slides: [github]

Automatic validation of rules

Before submitting rules for review, they should be first checked using the Python rulevalidator.